1 HisKA#1
467-533 aa · 67 aa · 9.8% of protein
Raw token
HisKA:467:0.000000000000424:533:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QWB75_RS07015
Histidine kinase, Classic
uncultured Catenibacterium sp. · GCF_937997555
ClassHKTypeClassicLength685 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_937997555#QWB75_RS07015Stable P2CS identifier used across views.
GenomeGCF_937997555Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length685 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 685 aa (23.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa685 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
578-670 aa · 93 aa · 13.6% of protein
Raw token
HATPase_c:578:0.000000000283:670:97:109- Raw architecture: HisKA:467:0.000000000000424:533:67:64#HATPase_c:578:0.000000000283:670:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_937997555::NZ_CALLFE010000023.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48595-51362Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_937997555::NZ_CALLFE010000023.1::G00009Context members
QWB75_RS07015QWB75_RS07020
Partner locus tags
QWB75_RS07015QWB75_RS07020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288951191.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQWB75_RS07015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CALLFE010000023.1Sequence record reported by the local genomic context database.
Genomic interval48 595-50 652 nt2 058 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 595-51 362 ntGCF_937997555::NZ_CALLFE010000023.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_937997555::NZ_CALLFE010000023.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CALLFE010000023.1All displayed genes belong to this local TCS context.
Neighborhood span48 595-51 362 nt2 768 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 595 nt51 362 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QWB75_RS07015GCF_937997555#QWB75_RS07015
HKClassicCurrent focus
48 595-50 652 nt · Reverse (-)
QWB75_RS07020GCF_937997555#QWB75_RS07020
RROmpR
50 658-51 362 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_937997555#QWB75_RS07015The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0805528
Simplified PFAM architecture for HKOC_0805528
PFAM domain coverage: 159 / 685 aa (23.2%)
1 aa685 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[467-533] | HATPase_c[578-669]
- Domain count: 2
- Matched identifier: HKOC_0805528
- Positioned domains: HisKA 467-533 ; HATPase_c 578-669
Cluster members and taxonomy
Representative gene: GCF_937997555#QWB75_RS07015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 286 142 · GCF_937997555
AssemblySRR11615778_bin.76_CONCOCT_v1.1_MAG · Contighaploid
Genome composition2 418 648 bp · 34,0% GCuncultured Catenibacterium sp.
Signal transduction countsGenes 34 · HK 15 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key