1 Response_reg#1
5-112 aa · 108 aa · 42.0% of protein
Raw token
Response_reg:5:2.66e-21:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS11895
Response regulator LytTR family
uncultured Bacteroides sp. · GCF_902472515
ClassRRTypeLytTRLength257 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS11895Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 257 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-252 aa · 99 aa · 38.5% of protein
Raw token
LytTR:154:7.47e-24:252:99:98- Raw architecture: Response_reg:5:2.66e-21:112:113:111#LytTR:154:7.47e-24:252:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000015.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span152463-153236Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000015.1::G00060Context members
RDP95_RS11895
Partner locus tags
RDP95_RS11895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294608844.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS11895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000015.1Sequence record reported by the local genomic context database.
Genomic interval152 463-153 236 nt774 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span152 463-153 236 ntGCF_902472515::NZ_CABROB010000015.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000015.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000015.1All displayed genes belong to this local TCS context.
Neighborhood span152 463-153 236 nt774 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 463 nt153 236 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS11895GCF_902472515#RDP95_RS11895
RRLytTRCurrent focus
152 463-153 236 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS11895The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0672812
Simplified PFAM architecture for RROC_0672812
PFAM domain coverage: 205 / 257 aa (79.8%)
1 aa257 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-111] | LytTR[156-253]
- Domain count: 2
- Matched identifier: RROC_0672812
- Positioned domains: Response_reg 5-111 ; LytTR 156-253
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS11895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key