1 HisKA#1
370-435 aa · 66 aa · 11.1% of protein
Raw token
HisKA:370:0.000000000000154:435:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS01195
Histidine kinase, Classic
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902472515#RDP95_RS01195Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 594 aa (29.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
481-590 aa · 110 aa · 18.5% of protein
Raw token
HATPase_c:481:7.21e-27:590:111:109- Raw architecture: HisKA:370:0.000000000000154:435:66:64#HATPase_c:481:7.21e-27:590:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902472515::NZ_CABROB010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span305752-308200Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000001.1::G00006Context members
RDP95_RS01195RDP95_RS01200
Partner locus tags
RDP95_RS01195RDP95_RS01200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757787.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS01195Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000001.1Sequence record reported by the local genomic context database.
Genomic interval305 752-307 536 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span305 752-308 200 ntGCF_902472515::NZ_CABROB010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span305 752-308 200 nt2 449 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 752 nt308 200 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDP95_RS01195GCF_902472515#RDP95_RS01195
HKClassicCurrent focus
305 752-307 536 nt · Reverse (-)
RDP95_RS01200GCF_902472515#RDP95_RS01200
RROmpR
307 511-308 200 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS01195The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1092385
Simplified PFAM architecture for HKOC_1092385
PFAM domain coverage: 176 / 594 aa (29.6%)
1 aa594 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[370-435] | HATPase_c[483-592]
- Domain count: 2
- Matched identifier: HKOC_1092385
- Positioned domains: HisKA 370-435 ; HATPase_c 483-592
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS01195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key