1 Response_reg#1
2-116 aa · 115 aa · 25.3% of protein
Raw token
Response_reg:2:8.69e-32:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS01090
Response regulator, unclassified
uncultured Bacteroides sp. · GCF_902472515
ClassRRTypePrrALength454 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS01090Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regAAAHTH_8
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage273 / 454 aa (60.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 AAA#2
166-283 aa · 118 aa · 26.0% of protein
Raw token
AAA:166:0.00000046:283:121:1303 HTH_8#3
408-447 aa · 40 aa · 8.8% of protein
Raw token
HTH_8:408:0.00000000000116:447:40:40- Raw architecture: Response_reg:2:8.69e-32:116:115:111#AAA:166:0.00000046:283:121:130#HTH_8:408:0.00000000000116:447:40:40
- Domain description: 1 Response_reg,1 AAA,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span281621-282985Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000001.1::G00005Context members
RDP95_RS01090
Partner locus tags
RDP95_RS01090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_308757768.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS01090Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000001.1Sequence record reported by the local genomic context database.
Genomic interval281 621-282 985 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span281 621-282 985 ntGCF_902472515::NZ_CABROB010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span281 621-282 985 nt1 365 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
281 621 nt282 985 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS01090GCF_902472515#RDP95_RS01090
RRPrrACurrent focus
281 621-282 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS01090The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0272954
Simplified PFAM architecture for RROC_0272954
PFAM domain coverage: 405 / 454 aa (89.2%)
1 aa454 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[2-116] | Sigma54_activat[142-308] | AAA_lid_14[314-394] | HTH_8[406-447]
- Domain count: 4
- Matched identifier: RROC_0272954
- Positioned domains: Response_reg 2-116 ; Sigma54_activat 142-308 ; AAA_lid_14 314-394 ; HTH_8 406-447
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS01090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key