1 HisKA#1
830-896 aa · 67 aa · 5.0% of protein
Raw token
HisKA:830:2.05e-16:896:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS04360
Histidine kinase, Hybrid
uncultured Bacteroides sp. · GCF_902472515
ClassHKTypeHybridLength1341 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902472515#RDP95_RS04360Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHTH_AraC
Protein length1341 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage364 / 1341 aa (27.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1341 aa
Domain-by-domain annotation5 items
2 HATPase_c#2
943-1051 aa · 109 aa · 8.1% of protein
Raw token
HATPase_c:943:1.83e-16:1051:110:1093 Response_reg#3
1097-1207 aa · 111 aa · 8.3% of protein
Raw token
Response_reg:1097:3.09e-34:1207:112:1114 HTH_AraC#4
1249-1291 aa · 43 aa · 3.2% of protein
Raw token
HTH_AraC:1249:0.0000000697:1291:43:425 HTH_AraC#5
1306-1339 aa · 34 aa · 2.5% of protein
Raw token
HTH_AraC:1306:0.000001:1339:34:42- Raw architecture: HisKA:830:2.05e-16:896:67:64#HATPase_c:943:1.83e-16:1051:110:109#Response_reg:1097:3.09e-34:1207:112:111#HTH_AraC:1249:0.0000000697:1291:43:42#HTH_AraC:1306:0.000001:1339:34:42
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902472515::NZ_CABROB010000005.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14923-18948Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000005.1::G00022Context members
RDP95_RS04360
Partner locus tags
RDP95_RS04360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294611170.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS04360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000005.1Sequence record reported by the local genomic context database.
Genomic interval14 923-18 948 nt4 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 923-18 948 ntGCF_902472515::NZ_CABROB010000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span14 923-18 948 nt4 026 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 923 nt18 948 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RDP95_RS04360GCF_902472515#RDP95_RS04360
HKHybridCurrent focus
14 923-18 948 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS04360The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_1810 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0101643
Simplified PFAM architecture for HKOC_0101643
PFAM domain coverage: 537 / 1341 aa (40.0%)
1 aa1341 aa
Reg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_cResponse_regHTH_18
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c + Response_reg + HTH_18
- Raw architecture: Reg_prop[36-58] | Reg_prop[81-103] | Reg_prop[309-331] | Reg_prop[357-379] | Reg_prop[486-507] | Y_Y_Y[713-775] | HisKA[831-895] | HATPase_c[945-1051] | Response_reg[1097-1207] | HTH_18[1263-1339]
- Domain count: 10
- Matched identifier: HKOC_0101643
- Positioned domains: Reg_prop 36-58 ; Reg_prop 81-103 ; Reg_prop 309-331 ; Reg_prop 357-379 ; Reg_prop 486-507 ; Y_Y_Y 713-775 ; HisKA 831-895 ; HATPase_c 945-1051 ; Response_reg 1097-1207 ; HTH_18 1263-1339
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS04360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key