1 Response_reg#1
6-116 aa · 111 aa · 44.4% of protein
Raw token
Response_reg:6:8.11e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RDP95_RS02500
Response regulator LytTR family
uncultured Bacteroides sp. · GCF_902472515
ClassRRTypeLytTRLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902472515#RDP95_RS02500Stable P2CS identifier used across views.
GenomeGCF_902472515Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 250 aa (64.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 LytTR#2
197-247 aa · 51 aa · 20.4% of protein
Raw token
LytTR:197:0.0000013:247:54:98- Raw architecture: Response_reg:6:8.11e-28:116:113:111#LytTR:197:0.0000013:247:54:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902472515::NZ_CABROB010000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span112312-115222Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902472515::NZ_CABROB010000003.1::G00017Context members
RDP95_RS02500RDP95_RS02505
Partner locus tags
RDP95_RS02500RDP95_RS02505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294606937.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRDP95_RS02500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABROB010000003.1Sequence record reported by the local genomic context database.
Genomic interval112 312-113 064 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span112 312-115 222 ntGCF_902472515::NZ_CABROB010000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902472515::NZ_CABROB010000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABROB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span112 312-115 222 nt2 911 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 312 nt115 222 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RDP95_RS02500GCF_902472515#RDP95_RS02500
RRLytTRCurrent focus
112 312-113 064 nt · Reverse (-)
RDP95_RS02505GCF_902472515#RDP95_RS02505
HKClassic
113 195-115 222 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902472515#RDP95_RS02500The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0731398
Simplified PFAM architecture for RROC_0731398
PFAM domain coverage: 161 / 250 aa (64.4%)
1 aa250 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[197-246]
- Domain count: 2
- Matched identifier: RROC_0731398
- Positioned domains: Response_reg 6-116 ; LytTR 197-246
Cluster members and taxonomy
Representative gene: GCF_902472515#RDP95_RS02500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 162 156 · GCF_902472515
AssemblyUHGG-TPA_MGYG-HGUT-01780 · Contighaploid
Genome composition6 261 722 bp · 43,5% GCuncultured Bacteroides sp.
Signal transduction countsGenes 138 · HK 101 · RR 28CheA 0 · PP 9
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumBacteroidotaClassBacteroidiaOrderBacteroidalesFamilyBacteroidaceaeGenusBacteroides
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Bacteroidota4Bacteroidia5Bacteroidales6Bacteroidaceae7Bacteroides
Related genes
Preview from the same derived genome key