1 HisKA#1
336-402 aa · 67 aa · 9.4% of protein
Raw token
HisKA:336:7.1e-16:402:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FY498_RS01110
Histidine kinase, Hybrid
Emergencia timonensis · GCF_902375995
ClassHKTypeHybridLength709 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_902375995#FY498_RS01110Stable P2CS identifier used across views.
GenomeGCF_902375995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Anaerovoracaceae; Emergencia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length709 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 709 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa709 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
449-563 aa · 115 aa · 16.2% of protein
Raw token
HATPase_c:449:3.17e-28:563:115:1093 Response_reg#3
588-705 aa · 118 aa · 16.6% of protein
Raw token
Response_reg:588:3.98e-28:705:118:111- Raw architecture: HisKA:336:7.1e-16:402:68:64#HATPase_c:449:3.17e-28:563:115:109#Response_reg:588:3.98e-28:705:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_902375995::NZ_CABKWE010000007.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span180726-182855Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902375995::NZ_CABKWE010000007.1::G00005Context members
FY498_RS01110
Partner locus tags
FY498_RS01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_067532693.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFY498_RS01110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABKWE010000007.1Sequence record reported by the local genomic context database.
Genomic interval180 726-182 855 nt2 130 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span180 726-182 855 ntGCF_902375995::NZ_CABKWE010000007.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902375995::NZ_CABKWE010000007.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABKWE010000007.1All displayed genes belong to this local TCS context.
Neighborhood span180 726-182 855 nt2 130 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 726 nt182 855 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FY498_RS01110GCF_902375995#FY498_RS01110
HKHybridCurrent focus
180 726-182 855 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900086585#BN6539_RS01140Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0754113
Simplified PFAM architecture for HKOC_0754113
PFAM domain coverage: 298 / 709 aa (42.0%)
1 aa709 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[336-402] | HATPase_c[449-562] | Response_reg[588-704]
- Domain count: 3
- Matched identifier: HKOC_0754113
- Positioned domains: HisKA 336-402 ; HATPase_c 449-562 ; Response_reg 588-704
Cluster members and taxonomy
Representative gene: GCF_900086585#BN6539_RS01140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 384 · GCF_902375995
AssemblyMGYG-HGUT-01547 · Contighaploid
Genome composition4 661 482 bp · 46,0% GCEmergencia timonensis
Signal transduction countsGenes 119 · HK 66 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyAnaerovoracaceaeGenusEmergencia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Anaerovoracaceae7Emergencia
Related genes
Preview from the same derived genome key