1 HisKA#1
232-296 aa · 65 aa · 14.5% of protein
Raw token
HisKA:232:1.63e-16:296:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FY498_RS00635
Histidine kinase, Classic
Emergencia timonensis · GCF_902375995
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902375995#FY498_RS00635Stable P2CS identifier used across views.
GenomeGCF_902375995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Anaerovoracaceae; Emergencia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 449 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
341-449 aa · 109 aa · 24.3% of protein
Raw token
HATPase_c:341:6.15e-29:449:109:109- Raw architecture: HisKA:232:1.63e-16:296:65:64#HATPase_c:341:6.15e-29:449:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902375995::NZ_CABKWE010000007.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82282-84304Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902375995::NZ_CABKWE010000007.1::G00003Context members
FY498_RS00635FY498_RS00640
Partner locus tags
FY498_RS00635FY498_RS00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_067532429.1Primary protein accession used for annex mappings.
UniProt accessionA0A415DX00Primary UniProt accession resolved in the annex database.
UniProt IDA0A415DX00_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFY498_RS00635Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABKWE010000007.1Sequence record reported by the local genomic context database.
Genomic interval82 282-83 631 nt1 350 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 282-84 304 ntGCF_902375995::NZ_CABKWE010000007.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902375995::NZ_CABKWE010000007.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABKWE010000007.1All displayed genes belong to this local TCS context.
Neighborhood span82 282-84 304 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 282 nt84 304 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FY498_RS00635GCF_902375995#FY498_RS00635
HKClassicCurrent focus
82 282-83 631 nt · Reverse (-)
FY498_RS00640GCF_902375995#FY498_RS00640
RROmpR
83 612-84 304 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003472745#DW099_RS15615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1977162
Simplified PFAM architecture for HKOC_1977162
PFAM domain coverage: 169 / 449 aa (37.6%)
1 aa449 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-296] | HATPase_c[345-448]
- Domain count: 2
- Matched identifier: HKOC_1977162
- Positioned domains: HisKA 232-296 ; HATPase_c 345-448
Cluster members and taxonomy
Representative gene: GCF_003472745#DW099_RS15615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 384 · GCF_902375995
AssemblyMGYG-HGUT-01547 · Contighaploid
Genome composition4 661 482 bp · 46,0% GCEmergencia timonensis
Signal transduction countsGenes 119 · HK 66 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyAnaerovoracaceaeGenusEmergencia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Anaerovoracaceae7Emergencia
Related genes
Preview from the same derived genome key