1 Response_reg#1
4-114 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:4:1.28e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FY498_RS00385
Response regulator OmpR family
Emergencia timonensis · GCF_902375995
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902375995#FY498_RS00385Stable P2CS identifier used across views.
GenomeGCF_902375995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Anaerovoracaceae; Emergencia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:147:6.77e-25:222:78:77- Raw architecture: Response_reg:4:1.28e-32:114:111:111#Trans_reg_C:147:6.77e-25:222:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902375995::NZ_CABKWE010000007.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18349-19946Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902375995::NZ_CABKWE010000007.1::G00001Context members
FY498_RS00385FY498_RS00390
Partner locus tags
FY498_RS00385FY498_RS00390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_067532300.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFY498_RS00385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABKWE010000007.1Sequence record reported by the local genomic context database.
Genomic interval18 349-19 035 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 349-19 946 ntGCF_902375995::NZ_CABKWE010000007.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902375995::NZ_CABKWE010000007.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABKWE010000007.1All displayed genes belong to this local TCS context.
Neighborhood span18 349-19 946 nt1 598 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 349 nt19 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FY498_RS00385GCF_902375995#FY498_RS00385
RROmpRCurrent focus
18 349-19 035 nt · Forward (+)
FY498_RS00390GCF_902375995#FY498_RS00390
HKClassic
19 032-19 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033194995#RVY71_RS18850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1335938
Simplified PFAM architecture for RROC_1335938
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1335938
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_033194995#RVY71_RS18850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 384 · GCF_902375995
AssemblyMGYG-HGUT-01547 · Contighaploid
Genome composition4 661 482 bp · 46,0% GCEmergencia timonensis
Signal transduction countsGenes 119 · HK 66 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyAnaerovoracaceaeGenusEmergencia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Anaerovoracaceae7Emergencia
Related genes
Preview from the same derived genome key