1 Response_reg#1
3-114 aa · 112 aa · 57.4% of protein
Raw token
Response_reg:3:2.94e-28:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FY498_RS00970
Response regulator, AmiR_NasR family
Emergencia timonensis · GCF_902375995
ClassRRTypeAmiR_NasRLength195 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902375995#FY498_RS00970Stable P2CS identifier used across views.
GenomeGCF_902375995Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Anaerovoracaceae; Emergencia
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length195 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 195 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa195 aa
Domain-by-domain annotation2 items
2 ANTAR#2
137-184 aa · 48 aa · 24.6% of protein
Raw token
ANTAR:137:0.00000000000000938:184:48:49- Raw architecture: Response_reg:3:2.94e-28:114:112:111#ANTAR:137:0.00000000000000938:184:48:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902375995::NZ_CABKWE010000007.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148623-150669Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_902375995::NZ_CABKWE010000007.1::G00004Context members
FY498_RS00965FY498_RS00970
Partner locus tags
FY498_RS00965FY498_RS00970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_067532611.1Primary protein accession used for annex mappings.
UniProt accessionA0A415DX70Primary UniProt accession resolved in the annex database.
UniProt IDA0A415DX70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFY498_RS00970Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CABKWE010000007.1Sequence record reported by the local genomic context database.
Genomic interval150 082-150 669 nt588 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span148 623-150 669 ntGCF_902375995::NZ_CABKWE010000007.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902375995::NZ_CABKWE010000007.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABKWE010000007.1All displayed genes belong to this local TCS context.
Neighborhood span148 623-150 669 nt2 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 623 nt150 669 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FY498_RS00965GCF_902375995#FY498_RS00965
HKClassic
148 623-150 098 nt · Reverse (-)
FY498_RS00970GCF_902375995#FY498_RS00970
RRAmiR_NasRCurrent focus
150 082-150 669 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003472745#DW099_RS15980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2158749
Simplified PFAM architecture for RROC_2158749
PFAM domain coverage: 161 / 195 aa (82.6%)
1 aa195 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[3-113] | ANTAR[134-183]
- Domain count: 2
- Matched identifier: RROC_2158749
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; ANTAR 134-183 ; ANTAR 134-183
Cluster members and taxonomy
Representative gene: GCF_003472745#DW099_RS15980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 776 384 · GCF_902375995
AssemblyMGYG-HGUT-01547 · Contighaploid
Genome composition4 661 482 bp · 46,0% GCEmergencia timonensis
Signal transduction countsGenes 119 · HK 66 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyAnaerovoracaceaeGenusEmergencia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Anaerovoracaceae7Emergencia
Related genes
Preview from the same derived genome key