1 Response_reg#1
16-126 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:16:5.3e-30:126:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
USA001_RS02680
Response regulator OmpR family
Bifidobacterium longum subsp. infantis · GCF_902167595
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167595#USA001_RS02680Stable P2CS identifier used across views.
GenomeGCF_902167595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 232 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-231 aa · 73 aa · 31.5% of protein
Raw token
Trans_reg_C:159:0.000000000000295:231:77:77- Raw architecture: Response_reg:16:5.3e-30:126:111:111#Trans_reg_C:159:0.000000000000295:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167595::NZ_CABHML010000029.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4399-6395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLONGUMMC1_00648RefSeq proteinWP_234883813.1
Context group ID
GCF_902167595::NZ_CABHML010000029.1::G00004Context members
USA001_RS02680USA001_RS02685
Partner locus tags
USA001_RS02680USA001_RS02685
Partner old locus tags
BLONGUMMC1_00648BLONGUMMC1_00649
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234883813.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUSA001_RS02680Primary locus identifier stored in the genes table.
Old locus tagBLONGUMMC1_00648Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHML010000029.1Sequence record reported by the local genomic context database.
Genomic interval4 399-5 097 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 399-6 395 ntGCF_902167595::NZ_CABHML010000029.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167595::NZ_CABHML010000029.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHML010000029.1All displayed genes belong to this local TCS context.
Neighborhood span4 399-6 395 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 399 nt6 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
USA001_RS02680GCF_902167595#USA001_RS02680
RROmpRCurrent focus
4 399-5 097 nt · Forward (+)
USA001_RS02685GCF_902167595#USA001_RS02685
HKClassic
5 094-6 395 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281425#RY69_RS01280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680821
Simplified PFAM architecture for RROC_0680821
PFAM domain coverage: 184 / 255 aa (72.2%)
1 aa255 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[39-149] | Trans_reg_C[182-254]
- Domain count: 2
- Matched identifier: RROC_0680821
- Positioned domains: Response_reg 39-149 ; Response_reg 39-149 ; Trans_reg_C 182-254 ; Trans_reg_C 182-254
Cluster members and taxonomy
Representative gene: GCF_001281425#RY69_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167595
AssemblyB.longum_ssp_infantis_4_mod2 · Scaffoldhaploid
Genome composition2 571 953 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 35 · HK 13 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key