1 Response_reg#1
39-149 aa · 111 aa · 43.5% of protein
Raw token
Response_reg:39:1.8e-30:149:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RY69_RS01280
Response regulator OmpR family
Bifidobacterium breve · GCF_001281425
ClassRRTypeOmpRLength255 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001281425#RY69_RS01280Stable P2CS identifier used across views.
GenomeGCF_001281425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 255 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
182-254 aa · 73 aa · 28.6% of protein
Raw token
Trans_reg_C:182:0.000000000000281:254:77:77- Raw architecture: Response_reg:39:1.8e-30:149:111:111#Trans_reg_C:182:0.000000000000281:254:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001281425::NZ_CP010413.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span277776-279841Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRY69_275RefSeq proteinWP_230846487.1
Context group ID
GCF_001281425::NZ_CP010413.1::G00003Context members
RY69_RS01275RY69_RS01280
Partner locus tags
RY69_RS01275RY69_RS01280
Partner old locus tags
RY69_274RY69_275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_230846487.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRY69_RS01280Primary locus identifier stored in the genes table.
Old locus tagRY69_275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP010413.1Sequence record reported by the local genomic context database.
Genomic interval279 074-279 841 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span277 776-279 841 ntGCF_001281425::NZ_CP010413.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001281425::NZ_CP010413.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP010413.1All displayed genes belong to this local TCS context.
Neighborhood span277 776-279 841 nt2 066 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
277 776 nt279 841 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RY69_RS01275GCF_001281425#RY69_RS01275
HKClassic
277 776-279 077 nt · Reverse (-)
RY69_RS01280GCF_001281425#RY69_RS01280
RROmpRCurrent focus
279 074-279 841 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281425#RY69_RS01280The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680821
Simplified PFAM architecture for RROC_0680821
PFAM domain coverage: 184 / 255 aa (72.2%)
1 aa255 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[39-149] | Trans_reg_C[182-254]
- Domain count: 2
- Matched identifier: RROC_0680821
- Positioned domains: Response_reg 39-149 ; Response_reg 39-149 ; Trans_reg_C 182-254 ; Trans_reg_C 182-254
Cluster members and taxonomy
Representative gene: GCF_001281425#RY69_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001281425
AssemblyASM128142v1 · Complete Genomehaploid
Genome composition2 426 006 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key