1 HAMP#1
128-198 aa · 71 aa · 16.4% of protein
Raw token
HAMP:128:0.00000226:198:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
USA001_RS02685
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167595
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167595#USA001_RS02685Stable P2CS identifier used across views.
GenomeGCF_902167595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 433 aa (53.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation3 items
2 HisKA#2
203-267 aa · 65 aa · 15.0% of protein
Raw token
HisKA:203:0.00000000000467:267:65:643 HATPase_c#3
315-411 aa · 97 aa · 22.4% of protein
Raw token
HATPase_c:315:0.00000000000274:411:97:109- Raw architecture: HAMP:128:0.00000226:198:76:69#HisKA:203:0.00000000000467:267:65:64#HATPase_c:315:0.00000000000274:411:97:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167595::NZ_CABHML010000029.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4399-6395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLONGUMMC1_00649RefSeq proteinWP_012576917.1
Context group ID
GCF_902167595::NZ_CABHML010000029.1::G00004Context members
USA001_RS02680USA001_RS02685
Partner locus tags
USA001_RS02680USA001_RS02685
Partner old locus tags
BLONGUMMC1_00648BLONGUMMC1_00649
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576917.1Primary protein accession used for annex mappings.
UniProt accessionB7GP10Primary UniProt accession resolved in the annex database.
UniProt IDB7GP10_BIFLSDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUSA001_RS02685Primary locus identifier stored in the genes table.
Old locus tagBLONGUMMC1_00649Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHML010000029.1Sequence record reported by the local genomic context database.
Genomic interval5 094-6 395 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 399-6 395 ntGCF_902167595::NZ_CABHML010000029.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167595::NZ_CABHML010000029.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHML010000029.1All displayed genes belong to this local TCS context.
Neighborhood span4 399-6 395 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 399 nt6 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
USA001_RS02680GCF_902167595#USA001_RS02680
RROmpR
4 399-5 097 nt · Forward (+)
USA001_RS02685GCF_902167595#USA001_RS02685
HKClassicCurrent focus
5 094-6 395 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020425#BLON_RS02580Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2140099
Simplified PFAM architecture for HKOC_2140099
PFAM domain coverage: 161 / 433 aa (37.2%)
1 aa433 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[203-266] | HATPase_c[317-413]
- Domain count: 2
- Matched identifier: HKOC_2140099
- Positioned domains: HisKA 203-266 ; HATPase_c 317-413
Cluster members and taxonomy
Representative gene: GCF_000020425#BLON_RS02580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167595
AssemblyB.longum_ssp_infantis_4_mod2 · Scaffoldhaploid
Genome composition2 571 953 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 35 · HK 13 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key