1 HisKA_3#1
219-283 aa · 65 aa · 14.7% of protein
Raw token
HisKA_3:219:0.0000000000643:283:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
USA001_RS02750
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_902167595
ClassHKTypeClassicLength441 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_902167595#USA001_RS02750Stable P2CS identifier used across views.
GenomeGCF_902167595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length441 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 441 aa (33.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa441 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-429 aa · 81 aa · 18.4% of protein
Raw token
HATPase_c:349:0.0000756:429:91:109- Raw architecture: HisKA_3:219:0.0000000000643:283:65:68#HATPase_c:349:0.0000756:429:91:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_902167595::NZ_CABHML010000029.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15549-17598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLONGUMMC1_00662RefSeq proteinWP_143723677.1
Context group ID
GCF_902167595::NZ_CABHML010000029.1::G00005Context members
USA001_RS02750USA001_RS02755
Partner locus tags
USA001_RS02750USA001_RS02755
Partner old locus tags
BLONGUMMC1_00662BLONGUMMC1_00663
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_143723677.1Primary protein accession used for annex mappings.
UniProt accessionA0A564RY63Primary UniProt accession resolved in the annex database.
UniProt IDA0A564RY63_BIFLIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUSA001_RS02750Primary locus identifier stored in the genes table.
Old locus tagBLONGUMMC1_00662Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CABHML010000029.1Sequence record reported by the local genomic context database.
Genomic interval15 549-16 874 nt1 326 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 549-17 598 ntGCF_902167595::NZ_CABHML010000029.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_902167595::NZ_CABHML010000029.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CABHML010000029.1All displayed genes belong to this local TCS context.
Neighborhood span15 549-17 598 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 549 nt17 598 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
USA001_RS02750GCF_902167595#USA001_RS02750
HKClassicCurrent focus
15 549-16 874 nt · Forward (+)
USA001_RS02755GCF_902167595#USA001_RS02755
RRNarL
16 891-17 598 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS08065Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2067709
Simplified PFAM architecture for HKOC_2067709
PFAM domain coverage: 68 / 441 aa (15.4%)
1 aa441 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[219-286]
- Domain count: 1
- Matched identifier: HKOC_2067709
- Positioned domains: HisKA_3 219-286
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS08065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_902167595
AssemblyB.longum_ssp_infantis_4_mod2 · Scaffoldhaploid
Genome composition2 571 953 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 35 · HK 13 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key