1 Response_reg#1
10-120 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:10:2.36e-28:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BM061_RS04465
Response regulator OmpR family
Clostridium cadaveris · GCF_900113105
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900113105#BM061_RS04465Stable P2CS identifier used across views.
GenomeGCF_900113105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:157:3.3e-30:233:77:77- Raw architecture: Response_reg:10:2.36e-28:120:112:111#Trans_reg_C:157:3.3e-30:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900113105::NZ_FOOE01000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117724-119471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04487885_10499RefSeq proteinWP_027637470.1
Context group ID
GCF_900113105::NZ_FOOE01000004.1::G00030Context members
BM061_RS04465BM061_RS04470
Partner locus tags
BM061_RS04465BM061_RS04470
Partner old locus tags
SAMN04487885_10499SAMN04487885_104100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027637470.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2K593Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2K593_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBM061_RS04465Primary locus identifier stored in the genes table.
Old locus tagSAMN04487885_10499Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FOOE01000004.1Sequence record reported by the local genomic context database.
Genomic interval117 724-118 440 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 724-119 471 ntGCF_900113105::NZ_FOOE01000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900113105::NZ_FOOE01000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FOOE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span117 724-119 471 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 724 nt119 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BM061_RS04465GCF_900113105#BM061_RS04465
RROmpRCurrent focus
117 724-118 440 nt · Forward (+)
BM061_RS04470GCF_900113105#BM061_RS04470
HKClassic
118 443-119 471 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0101020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0934004
Simplified PFAM architecture for RROC_0934004
PFAM domain coverage: 185 / 238 aa (77.7%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-119] | Trans_reg_C[159-233]
- Domain count: 2
- Matched identifier: RROC_0934004
- Positioned domains: Response_reg 10-119 ; Response_reg 10-119 ; Trans_reg_C 159-233 ; Trans_reg_C 159-233
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0101020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_900113105
AssemblyIMG-taxon 2623620513 annotated assembly · Scaffoldhaploid
Genome composition3 532 192 bp · 31,0% GCClostridium cadaveris
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key