1 Hpt#1
5-94 aa · 90 aa · 16.7% of protein
Raw token
Hpt:5:0.00000000000215:94:90:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BM061_RS01930
Histidine kinase, CheA
Clostridium cadaveris · GCF_900113105
ClassHKTypeCheALength538 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900113105#BM061_RS01930Stable P2CS identifier used across views.
GenomeGCF_900113105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage401 / 538 aa (74.5%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
170-227 aa · 58 aa · 10.8% of protein
Raw token
H-kinase_dim:170:0.000000329:227:58:673 HATPase_c#3
275-410 aa · 136 aa · 25.3% of protein
Raw token
HATPase_c:275:6.61e-17:410:136:1094 CheW#4
418-534 aa · 117 aa · 21.7% of protein
Raw token
CheW:418:1.01e-21:534:129:138- Raw architecture: Hpt:5:0.00000000000215:94:90:84#H-kinase_dim:170:0.000000329:227:58:67#HATPase_c:275:6.61e-17:410:136:109#CheW:418:1.01e-21:534:129:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900113105::NZ_FOOE01000002.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span53432-55048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04487885_10255RefSeq proteinWP_051196185.1
Context group ID
GCF_900113105::NZ_FOOE01000002.1::G00023Context members
BM061_RS01930
Partner locus tags
BM061_RS01930
Partner old locus tags
SAMN04487885_10255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051196185.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JIP1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JIP1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBM061_RS01930Primary locus identifier stored in the genes table.
Old locus tagSAMN04487885_10255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FOOE01000002.1Sequence record reported by the local genomic context database.
Genomic interval53 432-55 048 nt1 617 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 432-55 048 ntGCF_900113105::NZ_FOOE01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900113105::NZ_FOOE01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FOOE01000002.1All displayed genes belong to this local TCS context.
Neighborhood span53 432-55 048 nt1 617 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 432 nt55 048 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BM061_RS01930GCF_900113105#BM061_RS01930
HKCheACurrent focus
53 432-55 048 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0103605Use this link to inspect the representative gene detail.
PFAM architectureHpt + H-kinase_dim + HATPase_c + CheW4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1327035
Simplified PFAM architecture for HKOC_1327035
PFAM domain coverage: 390 / 538 aa (72.5%)
1 aa538 aa
HptH-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[6-87] | H-kinase_dim[169-224] | HATPase_c[276-410] | CheW[418-534]
- Domain count: 4
- Matched identifier: HKOC_1327035
- Positioned domains: Hpt 6-87 ; H-kinase_dim 169-224 ; HATPase_c 276-410 ; CheW 418-534
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0103605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_900113105
AssemblyIMG-taxon 2623620513 annotated assembly · Scaffoldhaploid
Genome composition3 532 192 bp · 31,0% GCClostridium cadaveris
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key