1 Response_reg#1
6-118 aa · 113 aa · 48.9% of protein
Raw token
Response_reg:6:7.93e-39:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BM061_RS01515
Response regulator OmpR family
Clostridium cadaveris · GCF_900113105
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900113105#BM061_RS01515Stable P2CS identifier used across views.
GenomeGCF_900113105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 231 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:151:3.85e-38:227:77:77- Raw architecture: Response_reg:6:7.93e-39:118:113:111#Trans_reg_C:151:3.85e-38:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900113105::NZ_FOOE01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span308880-311289Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04487885_101310RefSeq proteinWP_027638184.1
Context group ID
GCF_900113105::NZ_FOOE01000001.1::G00016Context members
BM061_RS01510BM061_RS01515
Partner locus tags
BM061_RS01510BM061_RS01515
Partner old locus tags
SAMN04487885_101309SAMN04487885_101310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027638184.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JFS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JFS7_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBM061_RS01515Primary locus identifier stored in the genes table.
Old locus tagSAMN04487885_101310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FOOE01000001.1Sequence record reported by the local genomic context database.
Genomic interval310 594-311 289 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span308 880-311 289 ntGCF_900113105::NZ_FOOE01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900113105::NZ_FOOE01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FOOE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span308 880-311 289 nt2 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 880 nt311 289 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BM061_RS01510GCF_900113105#BM061_RS01510
HKClassic
308 880-310 592 nt · Reverse (-)
BM061_RS01515GCF_900113105#BM061_RS01515
RROmpRCurrent focus
310 594-311 289 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0104940Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1159969
Simplified PFAM architecture for RROC_1159969
PFAM domain coverage: 189 / 231 aa (81.8%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-118] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1159969
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0104940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_900113105
AssemblyIMG-taxon 2623620513 annotated assembly · Scaffoldhaploid
Genome composition3 532 192 bp · 31,0% GCClostridium cadaveris
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key