1 sCache_like#1
63-129 aa · 67 aa · 11.8% of protein
Raw token
sCache_like:63:0.0000000811:129:67:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BM061_RS01510
Histidine kinase, Classic
Clostridium cadaveris · GCF_900113105
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900113105#BM061_RS01510Stable P2CS identifier used across views.
GenomeGCF_900113105Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPAS_8HisKAHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage366 / 570 aa (64.2%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation5 items
2 HAMP#2
159-226 aa · 68 aa · 11.9% of protein
Raw token
HAMP:159:0.0000000000000135:226:68:693 PAS_8#3
237-291 aa · 55 aa · 9.6% of protein
Raw token
PAS_8:237:0.00000381:291:55:654 HisKA#4
346-410 aa · 65 aa · 11.4% of protein
Raw token
HisKA:346:4.27e-20:410:65:645 HATPase_c#5
455-565 aa · 111 aa · 19.5% of protein
Raw token
HATPase_c:455:6.22e-30:565:111:109- Raw architecture: sCache_like:63:0.0000000811:129:67:114#HAMP:159:0.0000000000000135:226:68:69#PAS_8:237:0.00000381:291:55:65#HisKA:346:4.27e-20:410:65:64#HATPase_c:455:6.22e-30:565:111:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900113105::NZ_FOOE01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span308880-311289Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMN04487885_101309RefSeq proteinWP_027638183.1
Context group ID
GCF_900113105::NZ_FOOE01000001.1::G00016Context members
BM061_RS01510BM061_RS01515
Partner locus tags
BM061_RS01510BM061_RS01515
Partner old locus tags
SAMN04487885_101309SAMN04487885_101310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027638183.1Primary protein accession used for annex mappings.
UniProt accessionA0A316M4W9Primary UniProt accession resolved in the annex database.
UniProt IDA0A316M4W9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBM061_RS01510Primary locus identifier stored in the genes table.
Old locus tagSAMN04487885_101309Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FOOE01000001.1Sequence record reported by the local genomic context database.
Genomic interval308 880-310 592 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span308 880-311 289 ntGCF_900113105::NZ_FOOE01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900113105::NZ_FOOE01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FOOE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span308 880-311 289 nt2 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
308 880 nt311 289 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BM061_RS01510GCF_900113105#BM061_RS01510
HKClassicCurrent focus
308 880-310 592 nt · Reverse (-)
BM061_RS01515GCF_900113105#BM061_RS01515
RROmpR
310 594-311 289 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0104935Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1212061
Simplified PFAM architecture for HKOC_1212061
PFAM domain coverage: 275 / 570 aa (48.2%)
1 aa570 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[176-226] | PAS[238-286] | HisKA[346-410] | HATPase_c[456-565]
- Domain count: 4
- Matched identifier: HKOC_1212061
- Positioned domains: HAMP 176-226 ; PAS 238-286 ; HisKA 346-410 ; HATPase_c 456-565
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0104935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_900113105
AssemblyIMG-taxon 2623620513 annotated assembly · Scaffoldhaploid
Genome composition3 532 192 bp · 31,0% GCClostridium cadaveris
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key