1 PAS_4#1
13-69 aa · 57 aa · 6.9% of protein
Raw token
PAS_4:13:0.00000853:69:57:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS11550
Histidine kinase, Hybrid
uncultured Blautia sp. · GCF_900066335
ClassHKTypeHybridLength821 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS11550Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_cResponse_reg
Protein length821 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage358 / 821 aa (43.6%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa821 aa
Domain-by-domain annotation4 items
2 HisKA#2
427-492 aa · 66 aa · 8.0% of protein
Raw token
HisKA:427:1.73e-17:492:66:643 HATPase_c#3
541-658 aa · 118 aa · 14.4% of protein
Raw token
HATPase_c:541:8.32e-29:658:119:1094 Response_reg#4
685-801 aa · 117 aa · 14.3% of protein
Raw token
Response_reg:685:1.42e-27:801:117:111- Raw architecture: PAS_4:13:0.00000853:69:57:110#HisKA:427:1.73e-17:492:66:64#HATPase_c:541:8.32e-29:658:119:109#Response_reg:685:1.42e-27:801:117:111
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000013.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span19433-21898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_02300RefSeq proteinWP_294419873.1
Context group ID
GCF_900066335::NZ_FMEU01000013.1::G00044Context members
QZL78_RS11550
Partner locus tags
QZL78_RS11550
Partner old locus tags
SAMEA3545288_02300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294419873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS11550Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_02300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000013.1Sequence record reported by the local genomic context database.
Genomic interval19 433-21 898 nt2 466 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 433-21 898 ntGCF_900066335::NZ_FMEU01000013.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000013.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000013.1All displayed genes belong to this local TCS context.
Neighborhood span19 433-21 898 nt2 466 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 433 nt21 898 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS11550GCF_900066335#QZL78_RS11550
HKHybridCurrent focus
19 433-21 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS11550The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529478
Simplified PFAM architecture for HKOC_0529478
PFAM domain coverage: 298 / 821 aa (36.3%)
1 aa821 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[427-492] | HATPase_c[542-657] | Response_reg[685-800]
- Domain count: 3
- Matched identifier: HKOC_0529478
- Positioned domains: HisKA 427-492 ; HATPase_c 542-657 ; Response_reg 685-800
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS11550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key