1 GGDEF#1
132-275 aa · 144 aa · 20.6% of protein
Raw token
GGDEF:132:1.56e-36:275:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS02235
Response regulator, RpfG family
uncultured Blautia sp. · GCF_900066335
ClassRRTypeRpfGLength700 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900066335#QZL78_RS02235Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length700 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage358 / 700 aa (51.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa700 aa
Domain-by-domain annotation3 items
2 Response_reg#2
302-414 aa · 113 aa · 16.1% of protein
Raw token
Response_reg:302:9.28e-26:414:114:1113 HD#3
495-595 aa · 101 aa · 14.4% of protein
Raw token
HD:495:0.000000000000461:595:101:110- Raw architecture: GGDEF:132:1.56e-36:275:156:160#Response_reg:302:9.28e-26:414:114:111#HD:495:0.000000000000461:595:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900066335::NZ_FMEU01000002.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span39234-41336Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00429RefSeq proteinWP_294417593.1
Context group ID
GCF_900066335::NZ_FMEU01000002.1::G00021Context members
QZL78_RS02235
Partner locus tags
QZL78_RS02235
Partner old locus tags
SAMEA3545288_00429
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_294417593.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS02235Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00429Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000002.1Sequence record reported by the local genomic context database.
Genomic interval39 234-41 336 nt2 103 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 234-41 336 ntGCF_900066335::NZ_FMEU01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span39 234-41 336 nt2 103 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 234 nt41 336 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QZL78_RS02235GCF_900066335#QZL78_RS02235
RRRpfGCurrent focus
39 234-41 336 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900066335#QZL78_RS02235The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0030138
Simplified PFAM architecture for RROC_0030138
PFAM domain coverage: 387 / 700 aa (55.3%)
1 aa700 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[131-274] | Response_reg[302-413] | HD_5[484-614]
- Domain count: 3
- Matched identifier: RROC_0030138
- Positioned domains: GGDEF 131-274 ; Response_reg 302-413 ; HD_5 484-614
Cluster members and taxonomy
Representative gene: GCF_900066335#QZL78_RS02235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key