1 HAMP#1
45-115 aa · 71 aa · 21.1% of protein
Raw token
HAMP:45:0.00000000000905:115:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QZL78_RS01295
Histidine kinase, Classic
uncultured Blautia sp. · GCF_900066335
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900066335#QZL78_RS01295Stable P2CS identifier used across views.
GenomeGCF_900066335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 336 aa (72.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-186 aa · 67 aa · 19.9% of protein
Raw token
HisKA:120:5.81e-16:186:67:643 HATPase_c#3
230-336 aa · 107 aa · 31.8% of protein
Raw token
HATPase_c:230:1.48e-27:336:107:109- Raw architecture: HAMP:45:0.00000000000905:115:71:69#HisKA:120:5.81e-16:186:67:64#HATPase_c:230:1.48e-27:336:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900066335::NZ_FMEU01000001.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span268719-270397Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSAMEA3545288_00250RefSeq proteinWP_021978024.1
Context group ID
GCF_900066335::NZ_FMEU01000001.1::G00029Context members
QZL78_RS01295QZL78_RS01300
Partner locus tags
QZL78_RS01295QZL78_RS01300
Partner old locus tags
SAMEA3545288_00250SAMEA3545288_00251
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021978024.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQZL78_RS01295Primary locus identifier stored in the genes table.
Old locus tagSAMEA3545288_00250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FMEU01000001.1Sequence record reported by the local genomic context database.
Genomic interval268 719-269 729 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span268 719-270 397 ntGCF_900066335::NZ_FMEU01000001.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900066335::NZ_FMEU01000001.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMEU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span268 719-270 397 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
268 719 nt270 397 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QZL78_RS01295GCF_900066335#QZL78_RS01295
HKClassicCurrent focus
268 719-269 729 nt · Reverse (-)
QZL78_RS01300GCF_900066335#QZL78_RS01300
RROmpR
269 726-270 397 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013317245#G5B12_RS05165Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2847038
Simplified PFAM architecture for HKOC_2847038
PFAM domain coverage: 217 / 336 aa (64.6%)
1 aa336 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-115] | HisKA[120-185] | HATPase_c[231-335]
- Domain count: 3
- Matched identifier: HKOC_2847038
- Positioned domains: HAMP 70-115 ; HisKA 120-185 ; HATPase_c 231-335
Cluster members and taxonomy
Representative gene: GCF_013317245#G5B12_RS05165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 765 821 · GCF_900066335
Assembly13414_6#64 · Scaffoldhaploid
Genome composition3 557 791 bp · 44,0% GCuncultured Blautia sp.
Signal transduction countsGenes 78 · HK 38 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key