1 HisKA#1
194-255 aa · 62 aa · 15.6% of protein
Raw token
HisKA:194:0.00000000000163:255:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHHV_RS01335
Histidine kinase, Classic
Agathobacter rectalis · GCF_042850025
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042850025#ACGHHV_RS01335Stable P2CS identifier used across views.
GenomeGCF_042850025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 398 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
311-397 aa · 87 aa · 21.9% of protein
Raw token
HATPase_c:311:0.0000535:397:105:109- Raw architecture: HisKA:194:0.00000000000163:255:62:64#HATPase_c:311:0.0000535:397:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042850025::NZ_AP031452.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span258772-260653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK410107C12_02510RefSeq proteinWP_390430301.1
Context group ID
GCF_042850025::NZ_AP031452.1::G00006Context members
ACGHHV_RS01330ACGHHV_RS01335
Partner locus tags
ACGHHV_RS01330ACGHHV_RS01335
Partner old locus tags
K410107C12_02500K410107C12_02510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390430301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHHV_RS01335Primary locus identifier stored in the genes table.
Old locus tagK410107C12_02510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031452.1Sequence record reported by the local genomic context database.
Genomic interval259 457-260 653 nt1 197 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span258 772-260 653 ntGCF_042850025::NZ_AP031452.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042850025::NZ_AP031452.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031452.1All displayed genes belong to this local TCS context.
Neighborhood span258 772-260 653 nt1 882 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
258 772 nt260 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHHV_RS01330GCF_042850025#ACGHHV_RS01330
RROmpR
258 772-259 467 nt · Forward (+)
ACGHHV_RS01335GCF_042850025#ACGHHV_RS01335
HKClassicCurrent focus
259 457-260 653 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042850025#ACGHHV_RS01335The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2468253
Simplified PFAM architecture for HKOC_2468253
PFAM domain coverage: 62 / 398 aa (15.6%)
1 aa398 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[195-256]
- Domain count: 1
- Matched identifier: HKOC_2468253
- Positioned domains: HisKA 195-256
Cluster members and taxonomy
Representative gene: GCF_042850025#ACGHHV_RS01335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_042850025
AssemblyASM4285002v1 · Complete Genomehaploid
Genome composition3 214 923 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key