1 Response_reg#1
4-112 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:4:2.88e-32:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHHV_RS01265
Response regulator OmpR family
Agathobacter rectalis · GCF_042850025
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042850025#ACGHHV_RS01265Stable P2CS identifier used across views.
GenomeGCF_042850025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 231 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:6.37e-19:229:75:77- Raw architecture: Response_reg:4:2.88e-32:112:111:111#Trans_reg_C:156:6.37e-19:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042850025::NZ_AP031452.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span246967-248842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK410107C12_02370RefSeq proteinWP_306785359.1
Context group ID
GCF_042850025::NZ_AP031452.1::G00005Context members
ACGHHV_RS01265ACGHHV_RS01270
Partner locus tags
ACGHHV_RS01265ACGHHV_RS01270
Partner old locus tags
K410107C12_02370K410107C12_02380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306785359.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHHV_RS01265Primary locus identifier stored in the genes table.
Old locus tagK410107C12_02370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031452.1Sequence record reported by the local genomic context database.
Genomic interval246 967-247 662 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span246 967-248 842 ntGCF_042850025::NZ_AP031452.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042850025::NZ_AP031452.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031452.1All displayed genes belong to this local TCS context.
Neighborhood span246 967-248 842 nt1 876 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
246 967 nt248 842 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHHV_RS01265GCF_042850025#ACGHHV_RS01265
RROmpRCurrent focus
246 967-247 662 nt · Forward (+)
ACGHHV_RS01270GCF_042850025#ACGHHV_RS01270
HKClassic
247 652-248 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014866135#RDM18_RS10550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1174915
Simplified PFAM architecture for RROC_1174915
PFAM domain coverage: 183 / 231 aa (79.2%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1174915
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_014866135#RDM18_RS10550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_042850025
AssemblyASM4285002v1 · Complete Genomehaploid
Genome composition3 214 923 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key