1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:8.19e-23:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHHV_RS00760
Response regulator OmpR family
Agathobacter rectalis · GCF_042850025
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042850025#ACGHHV_RS00760Stable P2CS identifier used across views.
GenomeGCF_042850025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-221 aa · 77 aa · 34.5% of protein
Raw token
Trans_reg_C:145:1.45e-29:221:77:77- Raw architecture: Response_reg:4:8.19e-23:113:111:111#Trans_reg_C:145:1.45e-29:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042850025::NZ_AP031452.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149168-149839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK410107C12_01460RefSeq proteinWP_390430245.1
Context group ID
GCF_042850025::NZ_AP031452.1::G00003Context members
ACGHHV_RS00760
Partner locus tags
ACGHHV_RS00760
Partner old locus tags
K410107C12_01460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390430245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHHV_RS00760Primary locus identifier stored in the genes table.
Old locus tagK410107C12_01460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031452.1Sequence record reported by the local genomic context database.
Genomic interval149 168-149 839 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 168-149 839 ntGCF_042850025::NZ_AP031452.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042850025::NZ_AP031452.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031452.1All displayed genes belong to this local TCS context.
Neighborhood span149 168-149 839 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 168 nt149 839 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGHHV_RS00760GCF_042850025#ACGHHV_RS00760
RROmpRCurrent focus
149 168-149 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042850025#ACGHHV_RS00760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1630366
Simplified PFAM architecture for RROC_1630366
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-221]
- Domain count: 2
- Matched identifier: RROC_1630366
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-221
Cluster members and taxonomy
Representative gene: GCF_042850025#ACGHHV_RS00760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_042850025
AssemblyASM4285002v1 · Complete Genomehaploid
Genome composition3 214 923 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key