1 HisKA#1
191-252 aa · 62 aa · 15.7% of protein
Raw token
HisKA:191:0.00000000000156:252:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGHHV_RS01270
Histidine kinase, Classic
Agathobacter rectalis · GCF_042850025
ClassHKTypeClassicLength396 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042850025#ACGHHV_RS01270Stable P2CS identifier used across views.
GenomeGCF_042850025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length396 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 396 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa396 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-394 aa · 86 aa · 21.7% of protein
Raw token
HATPase_c:309:0.0000416:394:105:109- Raw architecture: HisKA:191:0.00000000000156:252:62:64#HATPase_c:309:0.0000416:394:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042850025::NZ_AP031452.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span246967-248842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK410107C12_02380RefSeq proteinWP_390430293.1
Context group ID
GCF_042850025::NZ_AP031452.1::G00005Context members
ACGHHV_RS01265ACGHHV_RS01270
Partner locus tags
ACGHHV_RS01265ACGHHV_RS01270
Partner old locus tags
K410107C12_02370K410107C12_02380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390430293.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGHHV_RS01270Primary locus identifier stored in the genes table.
Old locus tagK410107C12_02380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP031452.1Sequence record reported by the local genomic context database.
Genomic interval247 652-248 842 nt1 191 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span246 967-248 842 ntGCF_042850025::NZ_AP031452.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042850025::NZ_AP031452.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP031452.1All displayed genes belong to this local TCS context.
Neighborhood span246 967-248 842 nt1 876 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
246 967 nt248 842 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGHHV_RS01265GCF_042850025#ACGHHV_RS01265
RROmpR
246 967-247 662 nt · Forward (+)
ACGHHV_RS01270GCF_042850025#ACGHHV_RS01270
HKClassicCurrent focus
247 652-248 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042850025#ACGHHV_RS01270The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2486112
Simplified PFAM architecture for HKOC_2486112
PFAM domain coverage: 61 / 396 aa (15.4%)
1 aa396 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[192-252]
- Domain count: 1
- Matched identifier: HKOC_2486112
- Positioned domains: HisKA 192-252
Cluster members and taxonomy
Representative gene: GCF_042850025#ACGHHV_RS01270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_042850025
AssemblyASM4285002v1 · Complete Genomehaploid
Genome composition3 214 923 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key