1 Response_reg#1
2-115 aa · 114 aa · 80.3% of protein
Raw token
Response_reg:2:2.93e-27:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS12305
Response regulator, CheY family
Anaerostipes hadrus · GCF_042845895
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042845895#ACGG89_RS12305Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 142 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:2:2.93e-27:115:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042845895::NZ_BAABYN010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2513491-2516408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_24330RefSeq proteinWP_237967734.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00025Context members
ACGG89_RS12305ACGG89_RS12310
Partner locus tags
ACGG89_RS12305ACGG89_RS12310
Partner old locus tags
I2800192A2_24330I2800192A2_24340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237967734.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS12305Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_24330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 513 491-2 513 919 nt429 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 513 491-2 516 408 ntGCF_042845895::NZ_BAABYN010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 513 491-2 516 408 nt2 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 513 491 nt2 516 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACGG89_RS12305GCF_042845895#ACGG89_RS12305
RRCheYCurrent focus
2 513 491-2 513 919 nt · Reverse (-)
ACGG89_RS12310GCF_042845895#ACGG89_RS12310
HKClassic
2 513 898-2 516 408 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008416325#F2Y14_RS00400Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2260143
Simplified PFAM architecture for RROC_2260143
PFAM domain coverage: 114 / 142 aa (80.3%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-115]
- Domain count: 1
- Matched identifier: RROC_2260143
- Positioned domains: Response_reg 2-115 ; Response_reg 2-115
Cluster members and taxonomy
Representative gene: GCF_008416325#F2Y14_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key