1 HisKA#1
1-59 aa · 59 aa · 15.8% of protein
Raw token
HisKA:1:0.0000000000269:59:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS00375
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_042845895
ClassHKTypeHybridLength374 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042845895#ACGG89_RS00375Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 374 aa (78.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
106-223 aa · 118 aa · 31.6% of protein
Raw token
HATPase_c:106:1.52e-26:223:118:1093 Response_reg#3
247-364 aa · 118 aa · 31.6% of protein
Raw token
Response_reg:247:3.25e-30:364:118:111- Raw architecture: HisKA:1:0.0000000000269:59:59:64#HATPase_c:106:1.52e-26:223:118:109#Response_reg:247:3.25e-30:364:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042845895::NZ_BAABYN010000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span66826-67950Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_00680RefSeq proteinWP_173725648.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00002Context members
ACGG89_RS00375
Partner locus tags
ACGG89_RS00375
Partner old locus tags
I2800192A2_00680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173725648.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HX08Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HX08_ANAHADisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS00375Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_00680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval66 826-67 950 nt1 125 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 826-67 950 ntGCF_042845895::NZ_BAABYN010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span66 826-67 950 nt1 125 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 826 nt67 950 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGG89_RS00375GCF_042845895#ACGG89_RS00375
HKHybridCurrent focus
66 826-67 950 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405635#ARA30_RS15265Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0736414
Simplified PFAM architecture for HKOC_0736414
PFAM domain coverage: 300 / 718 aa (41.8%)
1 aa718 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[337-403] | HATPase_c[451-566] | Response_reg[591-707]
- Domain count: 3
- Matched identifier: HKOC_0736414
- Positioned domains: HisKA 337-403 ; HATPase_c 451-566 ; Response_reg 591-707
Cluster members and taxonomy
Representative gene: GCF_001405635#ARA30_RS15265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key