1 Response_reg#1
4-96 aa · 93 aa · 41.5% of protein
Raw token
Response_reg:4:0.000000000000169:96:93:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGG89_RS00965
Response regulator, unclassified
Anaerostipes hadrus · GCF_042845895
ClassRRTypeunclassifiedLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042845895#ACGG89_RS00965Stable P2CS identifier used across views.
GenomeGCF_042845895Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage93 / 224 aa (41.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.000000000000169:96:93:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042845895::NZ_BAABYN010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span188627-189301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagI2800192A2_01870RefSeq proteinWP_225084400.1
Context group ID
GCF_042845895::NZ_BAABYN010000001.1::G00006Context members
ACGG89_RS00965
Partner locus tags
ACGG89_RS00965
Partner old locus tags
I2800192A2_01870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_225084400.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AKY1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AKY1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGG89_RS00965Primary locus identifier stored in the genes table.
Old locus tagI2800192A2_01870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAABYN010000001.1Sequence record reported by the local genomic context database.
Genomic interval188 627-189 301 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span188 627-189 301 ntGCF_042845895::NZ_BAABYN010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042845895::NZ_BAABYN010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAABYN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span188 627-189 301 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 627 nt189 301 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGG89_RS00965GCF_042845895#ACGG89_RS00965
RRunclassifiedCurrent focus
188 627-189 301 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019413745#QDI32_RS02150Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1556951
Simplified PFAM architecture for RROC_1556951
PFAM domain coverage: 99 / 224 aa (44.2%)
1 aa224 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-102]
- Domain count: 1
- Matched identifier: RROC_1556951
- Positioned domains: Response_reg 4-102
Cluster members and taxonomy
Representative gene: GCF_019413745#QDI32_RS02150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_042845895
AssemblyASM4284589v1 · Contighaploid
Genome composition3 562 690 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 66 · HK 32 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key