1 Response_reg#1
2-115 aa · 114 aa · 80.3% of protein
Raw token
Response_reg:2:2.93e-27:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F2Y14_RS00400
Response regulator, CheY family
Anaerostipes hadrus · GCF_008416325
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008416325#F2Y14_RS00400Stable P2CS identifier used across views.
GenomeGCF_008416325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 142 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:2:2.93e-27:115:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008416325::NZ_VVXL01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83373-86290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagF2Y14_00400RefSeq proteinWP_237967734.1
Context group ID
GCF_008416325::NZ_VVXL01000001.1::G00010Context members
F2Y14_RS00395F2Y14_RS00400
Partner locus tags
F2Y14_RS00395F2Y14_RS00400
Partner old locus tags
F2Y14_00395F2Y14_00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237967734.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF2Y14_RS00400Primary locus identifier stored in the genes table.
Old locus tagF2Y14_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VVXL01000001.1Sequence record reported by the local genomic context database.
Genomic interval85 862-86 290 nt429 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span83 373-86 290 ntGCF_008416325::NZ_VVXL01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008416325::NZ_VVXL01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VVXL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span83 373-86 290 nt2 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 373 nt86 290 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F2Y14_RS00395GCF_008416325#F2Y14_RS00395
HKClassic
83 373-85 883 nt · Forward (+)
F2Y14_RS00400GCF_008416325#F2Y14_RS00400
RRCheYCurrent focus
85 862-86 290 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008416325#F2Y14_RS00400The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2260143
Simplified PFAM architecture for RROC_2260143
PFAM domain coverage: 114 / 142 aa (80.3%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-115]
- Domain count: 1
- Matched identifier: RROC_2260143
- Positioned domains: Response_reg 2-115 ; Response_reg 2-115
Cluster members and taxonomy
Representative gene: GCF_008416325#F2Y14_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_008416325
AssemblyASM841632v1 · Contighaploid
Genome composition3 000 551 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 47 · HK 25 · RR 21CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key