1 HAMP#1
289-357 aa · 69 aa · 11.4% of protein
Raw token
HAMP:289:0.00000000000407:357:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS22985
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS22985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 605 aa (37.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 HisKA#2
383-446 aa · 64 aa · 10.6% of protein
Raw token
HisKA:383:2.55e-17:446:64:643 HATPase_c#3
491-582 aa · 92 aa · 15.2% of protein
Raw token
HATPase_c:491:2.05e-24:582:92:109- Raw architecture: HAMP:289:0.00000000000407:357:69:69#HisKA:383:2.55e-17:446:64:64#HATPase_c:491:2.05e-24:582:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00050
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3944610-3946427Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00050Context members
SJY24_RS22985
Partner locus tags
SJY24_RS22985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377866299.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS22985Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval3 944 610-3 946 427 nt1 818 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 944 610-3 946 427 ntGCF_042466195::NZ_JAXHPX010000007.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 944 610-3 946 427 nt1 818 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 944 610 nt3 946 427 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS22985GCF_042466195#SJY24_RS22985
HKClassicCurrent focus
3 944 610-3 946 427 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS22985The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1031872
Simplified PFAM architecture for HKOC_1031872
PFAM domain coverage: 211 / 605 aa (34.9%)
1 aa605 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[307-356] | HisKA[383-446] | HATPase_c[493-589]
- Domain count: 3
- Matched identifier: HKOC_1031872
- Positioned domains: HAMP 307-356 ; HisKA 383-446 ; HATPase_c 493-589
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS22985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key