1 GAF#1
29-166 aa · 138 aa · 26.4% of protein
Raw token
GAF:29:0.00000000000074:166:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS03325
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042466195#SJY24_RS03325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFGAF_3HisKA_3HATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage413 / 523 aa (79.0%)Merged over positioned domains only.
Domain description1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation4 items
2 GAF_3#2
203-318 aa · 116 aa · 22.2% of protein
Raw token
GAF_3:203:0.00000000843:318:130:1293 HisKA_3#3
333-400 aa · 68 aa · 13.0% of protein
Raw token
HisKA_3:333:7.38e-22:400:68:684 HATPase_c#4
433-523 aa · 91 aa · 17.4% of protein
Raw token
HATPase_c:433:0.000000000124:523:106:109- Raw architecture: GAF:29:0.00000000000074:166:141:133#GAF_3:203:0.00000000843:318:130:129#HisKA_3:333:7.38e-22:400:68:68#HATPase_c:433:0.000000000124:523:106:109
- Domain description: 1 GAF,1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042466195::NZ_JAXHPX010000007.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span183278-185518Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00005Context members
SJY24_RS03325SJY24_RS03330
Partner locus tags
SJY24_RS03325SJY24_RS03330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377863739.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS03325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval183 278-184 849 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span183 278-185 518 ntGCF_042466195::NZ_JAXHPX010000007.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span183 278-185 518 nt2 241 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
183 278 nt185 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SJY24_RS03325GCF_042466195#SJY24_RS03325
HKClassicCurrent focus
183 278-184 849 nt · Forward (+)
SJY24_RS03330GCF_042466195#SJY24_RS03330
RRNarL
184 871-185 518 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS03325The current gene is the representative for this cluster.
PFAM architectureGAF_2 + GAF_3 + HisKA_3 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1383073
Simplified PFAM architecture for HKOC_1383073
PFAM domain coverage: 412 / 523 aa (78.8%)
1 aa523 aa
GAF_2GAF_3HisKA_3HATPase_c
- Simplified architecture: GAF_2 + GAF_3 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[28-166] | GAF_3[204-318] | HisKA_3[333-400] | HATPase_c[434-523]
- Domain count: 4
- Matched identifier: HKOC_1383073
- Positioned domains: GAF_2 28-166 ; GAF_3 204-318 ; HisKA_3 333-400 ; HATPase_c 434-523
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS03325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key