1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:0.0000000000121:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS03300
Response regulator LytTR family
Bacillus sp. R86525 · GCF_042466195
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS03300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 238 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:4.9e-28:237:102:98- Raw architecture: Response_reg:3:0.0000000000121:108:108:111#LytTR:136:4.9e-28:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span177910-178626Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00004Context members
SJY24_RS03300
Partner locus tags
SJY24_RS03300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377863735.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS03300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval177 910-178 626 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span177 910-178 626 ntGCF_042466195::NZ_JAXHPX010000007.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span177 910-178 626 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
177 910 nt178 626 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS03300GCF_042466195#SJY24_RS03300
RRLytTRCurrent focus
177 910-178 626 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS03300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0956653
Simplified PFAM architecture for RROC_0956653
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0956653
- Positioned domains: Response_reg 5-109 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS03300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key