1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:3.02e-24:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS03595
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042466195#SJY24_RS03595Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 376 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
286-367 aa · 82 aa · 21.8% of protein
Raw token
HATPase_c:286:0.0000000000649:367:100:109- Raw architecture: HisKA_3:178:3.02e-24:241:64:68#HATPase_c:286:0.0000000000649:367:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042466195::NZ_JAXHPX010000007.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span242527-244256Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00006Context members
SJY24_RS03595SJY24_RS03600
Partner locus tags
SJY24_RS03595SJY24_RS03600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377863773.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS03595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval242 527-243 657 nt1 131 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span242 527-244 256 ntGCF_042466195::NZ_JAXHPX010000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span242 527-244 256 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
242 527 nt244 256 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SJY24_RS03595GCF_042466195#SJY24_RS03595
HKClassicCurrent focus
242 527-243 657 nt · Forward (+)
SJY24_RS03600GCF_042466195#SJY24_RS03600
RRNarL
243 654-244 256 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS03595The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2647890
Simplified PFAM architecture for HKOC_2647890
PFAM domain coverage: 275 / 376 aa (73.1%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-148] | HisKA_3[178-241] | HATPase_c[284-349]
- Domain count: 3
- Matched identifier: HKOC_2647890
- Positioned domains: DesK_N 4-148 ; HisKA_3 178-241 ; HATPase_c 284-349
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS03595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key