1 HAMP#1
50-129 aa · 80 aa · 22.4% of protein
Raw token
HAMP:50:0.00000000275:129:80:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS20740
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042466195#SJY24_RS20740Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 357 aa (71.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
134-199 aa · 66 aa · 18.5% of protein
Raw token
HisKA:134:0.000000000000288:199:66:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:5.43e-32:352:110:109- Raw architecture: HAMP:50:0.00000000275:129:80:69#HisKA:134:0.000000000000288:199:66:64#HATPase_c:243:5.43e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042466195::NZ_JAXHPX010000007.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3507448-3509195Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00043Context members
SJY24_RS20740SJY24_RS20745
Partner locus tags
SJY24_RS20740SJY24_RS20745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377866024.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS20740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval3 507 448-3 508 521 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 507 448-3 509 195 ntGCF_042466195::NZ_JAXHPX010000007.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 507 448-3 509 195 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 507 448 nt3 509 195 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SJY24_RS20740GCF_042466195#SJY24_RS20740
HKClassicCurrent focus
3 507 448-3 508 521 nt · Reverse (-)
SJY24_RS20745GCF_042466195#SJY24_RS20745
RROmpR
3 508 518-3 509 195 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS20740The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2769493
Simplified PFAM architecture for HKOC_2769493
PFAM domain coverage: 175 / 357 aa (49.0%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[134-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2769493
- Positioned domains: HisKA 134-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS20740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key