1 HisKA#1
168-227 aa · 60 aa · 15.9% of protein
Raw token
HisKA:168:0.000000000000447:227:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS19180
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS19180Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 377 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
271-375 aa · 105 aa · 27.9% of protein
Raw token
HATPase_c:271:4.54e-19:375:109:109- Raw architecture: HisKA:168:0.000000000000447:227:61:64#HATPase_c:271:4.54e-19:375:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00040
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3204500-3205633Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00040Context members
SJY24_RS19180
Partner locus tags
SJY24_RS19180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_098763602.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B9QBJ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B9QBJ2_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS19180Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval3 204 500-3 205 633 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 204 500-3 205 633 ntGCF_042466195::NZ_JAXHPX010000007.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span3 204 500-3 205 633 nt1 134 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 204 500 nt3 205 633 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS19180GCF_042466195#SJY24_RS19180
HKClassicCurrent focus
3 204 500-3 205 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002576595#CN984_RS06225Use this link to inspect the representative gene detail.
PFAM architectureHisK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2635590
Simplified PFAM architecture for HKOC_2635590
PFAM domain coverage: 291 / 377 aa (77.2%)
1 aa377 aa
HisK_NHisKAHATPase_c
- Simplified architecture: HisK_N + HisKA + HATPase_c
- Raw architecture: HisK_N[16-144] | HisKA[168-227] | HATPase_c[274-375]
- Domain count: 3
- Matched identifier: HKOC_2635590
- Positioned domains: HisK_N 16-144 ; HisKA 168-227 ; HATPase_c 274-375
Cluster members and taxonomy
Representative gene: GCF_002576595#CN984_RS06225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key