1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.000000000000684:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS13565
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS13565Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 418 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-417 aa · 104 aa · 24.9% of protein
Raw token
HATPase_c:314:5.73e-22:417:107:109- Raw architecture: HisKA:208:0.000000000000684:271:64:64#HATPase_c:314:5.73e-22:417:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2137028-2138284Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00025Context members
SJY24_RS13565
Partner locus tags
SJY24_RS13565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377864977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS13565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval2 137 028-2 138 284 nt1 257 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 137 028-2 138 284 ntGCF_042466195::NZ_JAXHPX010000007.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span2 137 028-2 138 284 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 137 028 nt2 138 284 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS13565GCF_042466195#SJY24_RS13565
HKClassicCurrent focus
2 137 028-2 138 284 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS13565The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2291402
Simplified PFAM architecture for HKOC_2291402
PFAM domain coverage: 165 / 418 aa (39.5%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-270] | HATPase_c[316-417]
- Domain count: 2
- Matched identifier: HKOC_2291402
- Positioned domains: HisKA 208-270 ; HATPase_c 316-417
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS13565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key