1 PAS_9#1
42-139 aa · 98 aa · 19.2% of protein
Raw token
PAS_9:42:0.000000000341:139:99:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS12465
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS12465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_4HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage381 / 510 aa (74.7%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation4 items
2 PAS_4#2
163-277 aa · 115 aa · 22.5% of protein
Raw token
PAS_4:163:0.00000000000000907:277:115:1103 HisKA#3
292-352 aa · 61 aa · 12.0% of protein
Raw token
HisKA:292:0.000000000000405:352:61:644 HATPase_c#4
397-503 aa · 107 aa · 21.0% of protein
Raw token
HATPase_c:397:3.09e-28:503:110:109- Raw architecture: PAS_9:42:0.000000000341:139:99:102#PAS_4:163:0.00000000000000907:277:115:110#HisKA:292:0.000000000000405:352:61:64#HATPase_c:397:3.09e-28:503:110:109
- Domain description: 1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1914276-1915808Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00022Context members
SJY24_RS12465
Partner locus tags
SJY24_RS12465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377864828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS12465Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval1 914 276-1 915 808 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 914 276-1 915 808 ntGCF_042466195::NZ_JAXHPX010000007.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 914 276-1 915 808 nt1 533 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 914 276 nt1 915 808 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS12465GCF_042466195#SJY24_RS12465
HKClassicCurrent focus
1 914 276-1 915 808 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS12465The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1431743
Simplified PFAM architecture for HKOC_1431743
PFAM domain coverage: 376 / 510 aa (73.7%)
1 aa510 aa
PAS_9PAS_4HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_9[42-137] | PAS_4[163-276] | HisKA[292-351] | HATPase_c[397-502]
- Domain count: 4
- Matched identifier: HKOC_1431743
- Positioned domains: PAS_9 42-137 ; PAS_4 163-276 ; HisKA 292-351 ; HATPase_c 397-502
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS12465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key