1 HisKA#1
193-248 aa · 56 aa · 13.7% of protein
Raw token
HisKA:193:0.000000000261:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS06430
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042466195#SJY24_RS06430Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 409 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-402 aa · 107 aa · 26.2% of protein
Raw token
HATPase_c:296:8.57e-17:402:110:109- Raw architecture: HisKA:193:0.000000000261:248:57:64#HATPase_c:296:8.57e-17:402:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042466195::NZ_JAXHPX010000007.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span769280-770509Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000007.1::G00014Context members
SJY24_RS06430
Partner locus tags
SJY24_RS06430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_377864107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS06430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000007.1Sequence record reported by the local genomic context database.
Genomic interval769 280-770 509 nt1 230 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span769 280-770 509 ntGCF_042466195::NZ_JAXHPX010000007.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000007.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span769 280-770 509 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
769 280 nt770 509 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SJY24_RS06430GCF_042466195#SJY24_RS06430
HKClassicCurrent focus
769 280-770 509 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042466195#SJY24_RS06430The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2368867
Simplified PFAM architecture for HKOC_2368867
PFAM domain coverage: 319 / 409 aa (78.0%)
1 aa409 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-401]
- Domain count: 3
- Matched identifier: HKOC_2368867
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-401
Cluster members and taxonomy
Representative gene: GCF_042466195#SJY24_RS06430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key