1 HAMP#1
58-126 aa · 69 aa · 19.2% of protein
Raw token
HAMP:58:0.00000000213:126:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SJY24_RS00515
Histidine kinase, Classic
Bacillus sp. R86525 · GCF_042466195
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042466195#SJY24_RS00515Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 359 aa (63.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-201 aa · 64 aa · 17.8% of protein
Raw token
HisKA:138:0.0000000000000165:201:64:643 HATPase_c#3
250-344 aa · 95 aa · 26.5% of protein
Raw token
HATPase_c:250:8.42e-16:344:95:109- Raw architecture: HAMP:58:0.00000000213:126:69:69#HisKA:138:0.0000000000000165:201:64:64#HATPase_c:250:8.42e-16:344:95:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042466195::NZ_JAXHPX010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80172-81934Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_042466195::NZ_JAXHPX010000001.1::G00001Context members
SJY24_RS00515SJY24_RS00520
Partner locus tags
SJY24_RS00515SJY24_RS00520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_269482218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSJY24_RS00515Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAXHPX010000001.1Sequence record reported by the local genomic context database.
Genomic interval80 172-81 251 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span80 172-81 934 ntGCF_042466195::NZ_JAXHPX010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042466195::NZ_JAXHPX010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHPX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 172-81 934 nt1 763 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 172 nt81 934 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SJY24_RS00515GCF_042466195#SJY24_RS00515
HKClassicCurrent focus
80 172-81 251 nt · Reverse (-)
SJY24_RS00520GCF_042466195#SJY24_RS00520
RROmpR
81 248-81 934 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027306445#EJ131_RS27305Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2756203
Simplified PFAM architecture for HKOC_2756203
PFAM domain coverage: 203 / 359 aa (56.5%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[83-125] | HisKA[138-201] | HATPase_c[251-346]
- Domain count: 3
- Matched identifier: HKOC_2756203
- Positioned domains: HAMP 83-125 ; HisKA 138-201 ; HATPase_c 251-346
Cluster members and taxonomy
Representative gene: GCF_027306445#EJ131_RS27305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 101 709 · GCF_042466195
AssemblyASM4246619v1 · Contighaploid
Genome composition6 240 339 bp · 35,5% GCBacillus sp. R86525
Signal transduction countsGenes 132 · HK 71 · RR 61CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key