1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:8.77e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS19315
Response regulator NarL family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS19315Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-204 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:147:5.77e-21:204:58:58- Raw architecture: Response_reg:4:8.77e-29:116:113:111#HTH_LUXR:147:5.77e-21:204:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000033.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51607-53365Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_19310RefSeq proteinWP_327870945.1
Context group ID
GCF_036211925::NZ_JARMCN010000033.1::G00040Context members
P4U41_RS19315P4U41_RS19320
Partner locus tags
P4U41_RS19315P4U41_RS19320
Partner old locus tags
P4U41_19310P4U41_19315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327870945.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS19315Primary locus identifier stored in the genes table.
Old locus tagP4U41_19310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000033.1Sequence record reported by the local genomic context database.
Genomic interval51 607-52 239 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 607-53 365 ntGCF_036211925::NZ_JARMCN010000033.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000033.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000033.1All displayed genes belong to this local TCS context.
Neighborhood span51 607-53 365 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 607 nt53 365 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS19315GCF_036211925#P4U41_RS19315
RRNarLCurrent focus
51 607-52 239 nt · Reverse (-)
P4U41_RS19320GCF_036211925#P4U41_RS19320
HKClassic
52 241-53 365 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS19315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2034108
Simplified PFAM architecture for RROC_2034108
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[150-204]
- Domain count: 2
- Matched identifier: RROC_2034108
- Positioned domains: Response_reg 4-116 ; GerE 150-204
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS19315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key