1 Response_reg#1
9-121 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:9:1.01e-33:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS17310
Response regulator NarL family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS17310Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 233 aa (73.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-224 aa · 58 aa · 24.9% of protein
Raw token
HTH_LUXR:167:7.54e-23:224:58:58- Raw architecture: Response_reg:9:1.01e-33:121:113:111#HTH_LUXR:167:7.54e-23:224:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000026.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41991-43908Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_17305RefSeq proteinWP_022629155.1
Context group ID
GCF_036211925::NZ_JARMCN010000026.1::G00038Context members
P4U41_RS17305P4U41_RS17310
Partner locus tags
P4U41_RS17305P4U41_RS17310
Partner old locus tags
P4U41_17300P4U41_17305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022629155.1Primary protein accession used for annex mappings.
UniProt accessionU6SMY0Primary UniProt accession resolved in the annex database.
UniProt IDU6SMY0_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS17310Primary locus identifier stored in the genes table.
Old locus tagP4U41_17305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000026.1Sequence record reported by the local genomic context database.
Genomic interval43 207-43 908 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 991-43 908 ntGCF_036211925::NZ_JARMCN010000026.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000026.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000026.1All displayed genes belong to this local TCS context.
Neighborhood span41 991-43 908 nt1 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 991 nt43 908 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS17305GCF_036211925#P4U41_RS17305
HKClassic
41 991-43 115 nt · Forward (+)
P4U41_RS17310GCF_036211925#P4U41_RS17310
RRNarLCurrent focus
43 207-43 908 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000474275#A33I_RS14985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082831
Simplified PFAM architecture for RROC_1082831
PFAM domain coverage: 169 / 233 aa (72.5%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-121] | GerE[169-224]
- Domain count: 2
- Matched identifier: RROC_1082831
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; GerE 169-224 ; GerE 169-224
Cluster members and taxonomy
Representative gene: GCF_000474275#A33I_RS14985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key