1 HAMP#1
73-141 aa · 69 aa · 18.8% of protein
Raw token
HAMP:73:0.000000000475:141:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS15500
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS15500Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 368 aa (64.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
146-206 aa · 61 aa · 16.6% of protein
Raw token
HisKA:146:0.0000000000000797:206:61:643 HATPase_c#3
259-366 aa · 108 aa · 29.3% of protein
Raw token
HATPase_c:259:6.94e-21:366:109:109- Raw architecture: HAMP:73:0.000000000475:141:69:69#HisKA:146:0.0000000000000797:206:61:64#HATPase_c:259:6.94e-21:366:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000022.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38674-40450Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_15500RefSeq proteinWP_012958009.1
Context group ID
GCF_036211925::NZ_JARMCN010000022.1::G00036Context members
P4U41_RS15495P4U41_RS15500
Partner locus tags
P4U41_RS15495P4U41_RS15500
Partner old locus tags
P4U41_15495P4U41_15500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958009.1Primary protein accession used for annex mappings.
UniProt accessionD3FXD4Primary UniProt accession resolved in the annex database.
UniProt IDD3FXD4_ALKPODisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS15500Primary locus identifier stored in the genes table.
Old locus tagP4U41_15500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000022.1Sequence record reported by the local genomic context database.
Genomic interval39 344-40 450 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 674-40 450 ntGCF_036211925::NZ_JARMCN010000022.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000022.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000022.1All displayed genes belong to this local TCS context.
Neighborhood span38 674-40 450 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 674 nt40 450 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS15495GCF_036211925#P4U41_RS15495
RROmpR
38 674-39 354 nt · Forward (+)
P4U41_RS15500GCF_036211925#P4U41_RS15500
HKClassicCurrent focus
39 344-40 450 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS05095Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2697985
Simplified PFAM architecture for HKOC_2697985
PFAM domain coverage: 224 / 368 aa (60.9%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[90-141] | HisKA[147-208] | HATPase_c[258-367]
- Domain count: 3
- Matched identifier: HKOC_2697985
- Positioned domains: HAMP 90-141 ; HisKA 147-208 ; HATPase_c 258-367
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS05095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key