1 Response_reg#1
5-113 aa · 109 aa · 22.4% of protein
Raw token
Response_reg:5:0.0000000805:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS11985
Response regulator, unclassified
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeunclassifiedLength486 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS11985Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 486 aa (22.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.0000000805:113:115:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000017.1::G00031
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span169681-171141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_11985RefSeq proteinWP_327870027.1
Context group ID
GCF_036211925::NZ_JARMCN010000017.1::G00031Context members
P4U41_RS11985
Partner locus tags
P4U41_RS11985
Partner old locus tags
P4U41_11985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327870027.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS11985Primary locus identifier stored in the genes table.
Old locus tagP4U41_11985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000017.1Sequence record reported by the local genomic context database.
Genomic interval169 681-171 141 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span169 681-171 141 ntGCF_036211925::NZ_JARMCN010000017.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000017.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000017.1All displayed genes belong to this local TCS context.
Neighborhood span169 681-171 141 nt1 461 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 681 nt171 141 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS11985GCF_036211925#P4U41_RS11985
RRunclassifiedCurrent focus
169 681-171 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS11985The current gene is the representative for this cluster.
PFAM architectureHTH_181 domain in the representative PFAM annotation.
PFAM architecture for RROC_0173737
Simplified PFAM architecture for RROC_0173737
PFAM domain coverage: 78 / 486 aa (16.0%)
1 aa486 aa
HTH_18
- Simplified architecture: HTH_18
- Raw architecture: HTH_18[407-484]
- Domain count: 1
- Matched identifier: RROC_0173737
- Positioned domains: HTH_18 407-484
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS11985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key