1 Response_reg#1
4-115 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:4:1.43e-28:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS08770
Response regulator, CheY family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS08770Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.43e-28:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000015.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114328-117559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_08765RefSeq proteinWP_012958317.1
Context group ID
GCF_036211925::NZ_JARMCN010000015.1::G00027Context members
P4U41_RS08770P4U41_RS08775
Partner locus tags
P4U41_RS08770P4U41_RS08775
Partner old locus tags
P4U41_08765P4U41_08770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012958317.1Primary protein accession used for annex mappings.
UniProt accessionD3FZ86Primary UniProt accession resolved in the annex database.
UniProt IDD3FZ86_ALKPODisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS08770Primary locus identifier stored in the genes table.
Old locus tagP4U41_08765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000015.1Sequence record reported by the local genomic context database.
Genomic interval114 328-114 690 nt363 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 328-117 559 ntGCF_036211925::NZ_JARMCN010000015.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000015.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000015.1All displayed genes belong to this local TCS context.
Neighborhood span114 328-117 559 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 328 nt117 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS08770GCF_036211925#P4U41_RS08770
RRCheYCurrent focus
114 328-114 690 nt · Forward (+)
P4U41_RS08775GCF_036211925#P4U41_RS08775
HKHybrid
114 683-117 559 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS06630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2434049
Simplified PFAM architecture for RROC_2434049
PFAM domain coverage: 111 / 120 aa (92.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_2434049
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS06630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key