1 PAS_4#1
154-240 aa · 87 aa · 14.4% of protein
Raw token
PAS_4:154:0.00000000405:240:90:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS08480
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS08480Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage354 / 603 aa (58.7%)Merged over positioned domains only.
Domain description1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation4 items
2 PAS_9#2
277-376 aa · 100 aa · 16.6% of protein
Raw token
PAS_9:277:0.00000182:376:104:1023 HisKA#3
395-455 aa · 61 aa · 10.1% of protein
Raw token
HisKA:395:8.68e-17:455:61:644 HATPase_c#4
497-602 aa · 106 aa · 17.6% of protein
Raw token
HATPase_c:497:3.4e-29:602:109:109- Raw architecture: PAS_4:154:0.00000000405:240:90:110#PAS_9:277:0.00000182:376:104:102#HisKA:395:8.68e-17:455:61:64#HATPase_c:497:3.4e-29:602:109:109
- Domain description: 1 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000015.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span58872-60683Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_08475RefSeq proteinWP_327869658.1
Context group ID
GCF_036211925::NZ_JARMCN010000015.1::G00025Context members
P4U41_RS08480
Partner locus tags
P4U41_RS08480
Partner old locus tags
P4U41_08475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327869658.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS08480Primary locus identifier stored in the genes table.
Old locus tagP4U41_08475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000015.1Sequence record reported by the local genomic context database.
Genomic interval58 872-60 683 nt1 812 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 872-60 683 ntGCF_036211925::NZ_JARMCN010000015.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000015.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000015.1All displayed genes belong to this local TCS context.
Neighborhood span58 872-60 683 nt1 812 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 872 nt60 683 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS08480GCF_036211925#P4U41_RS08480
HKClassicCurrent focus
58 872-60 683 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS08480The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1040520
Simplified PFAM architecture for HKOC_1040520
PFAM domain coverage: 400 / 603 aa (66.3%)
1 aa603 aa
PAS_9PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[20-58] | PAS_4[155-253] | PAS_9[280-376] | HisKA[395-454] | HATPase_c[498-602]
- Domain count: 5
- Matched identifier: HKOC_1040520
- Positioned domains: PAS_9 20-58 ; PAS_4 155-253 ; PAS_9 280-376 ; HisKA 395-454 ; HATPase_c 498-602
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS08480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key