1 Response_reg#1
6-114 aa · 109 aa · 48.0% of protein
Raw token
Response_reg:6:3.07e-27:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS04880
Response regulator OmpR family
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS04880Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 227 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-223 aa · 68 aa · 30.0% of protein
Raw token
Trans_reg_C:156:4.35e-20:223:73:77- Raw architecture: Response_reg:6:3.07e-27:114:111:111#Trans_reg_C:156:4.35e-20:223:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000006.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73577-75654Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_04875RefSeq proteinWP_012957703.1
Context group ID
GCF_036211925::NZ_JARMCN010000006.1::G00014Context members
P4U41_RS04880P4U41_RS04885
Partner locus tags
P4U41_RS04880P4U41_RS04885
Partner old locus tags
P4U41_04875P4U41_04880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012957703.1Primary protein accession used for annex mappings.
UniProt accessionU6STJ6Primary UniProt accession resolved in the annex database.
UniProt IDU6STJ6_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS04880Primary locus identifier stored in the genes table.
Old locus tagP4U41_04875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000006.1Sequence record reported by the local genomic context database.
Genomic interval73 577-74 260 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 577-75 654 ntGCF_036211925::NZ_JARMCN010000006.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000006.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span73 577-75 654 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 577 nt75 654 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS04880GCF_036211925#P4U41_RS04880
RROmpRCurrent focus
73 577-74 260 nt · Forward (+)
P4U41_RS04885GCF_036211925#P4U41_RS04885
HKClassic
74 257-75 654 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS03610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1353985
Simplified PFAM architecture for RROC_1353985
PFAM domain coverage: 175 / 227 aa (77.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[156-223]
- Domain count: 2
- Matched identifier: RROC_1353985
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 156-223 ; Trans_reg_C 156-223
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS03610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key