1 PAS_9#1
196-285 aa · 90 aa · 17.6% of protein
Raw token
PAS_9:196:0.00000000000024:285:102:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS04240
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS04240Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 510 aa (49.0%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
303-358 aa · 56 aa · 11.0% of protein
Raw token
HisKA:303:0.000000000000238:358:61:643 HATPase_c#3
400-503 aa · 104 aa · 20.4% of protein
Raw token
HATPase_c:400:4.51e-26:503:107:109- Raw architecture: PAS_9:196:0.00000000000024:285:102:102#HisKA:303:0.000000000000238:358:61:64#HATPase_c:400:4.51e-26:503:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000005.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44653-46185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_04235RefSeq proteinWP_327869215.1
Context group ID
GCF_036211925::NZ_JARMCN010000005.1::G00011Context members
P4U41_RS04240
Partner locus tags
P4U41_RS04240
Partner old locus tags
P4U41_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327869215.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS04240Primary locus identifier stored in the genes table.
Old locus tagP4U41_04235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000005.1Sequence record reported by the local genomic context database.
Genomic interval44 653-46 185 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 653-46 185 ntGCF_036211925::NZ_JARMCN010000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span44 653-46 185 nt1 533 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 653 nt46 185 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS04240GCF_036211925#P4U41_RS04240
HKClassicCurrent focus
44 653-46 185 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS04240The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1431179
Simplified PFAM architecture for HKOC_1431179
PFAM domain coverage: 249 / 510 aa (48.8%)
1 aa510 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[197-285] | HisKA[303-357] | HATPase_c[400-504]
- Domain count: 3
- Matched identifier: HKOC_1431179
- Positioned domains: PAS_9 197-285 ; HisKA 303-357 ; HATPase_c 400-504
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS04240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key