1 MEDS#1
21-173 aa · 153 aa · 26.0% of protein
Raw token
MEDS:21:1.54e-19:173:160:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS03905
Histidine kinase, Classic
Alkalihalophilus marmarensis · GCF_036211925
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_036211925#P4U41_RS03905Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
MEDSHisKAHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage314 / 588 aa (53.4%)Merged over positioned domains only.
Domain description1 MEDS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation3 items
2 HisKA#2
362-418 aa · 57 aa · 9.7% of protein
Raw token
HisKA:362:0.0000000000911:418:58:643 HATPase_c#3
467-570 aa · 104 aa · 17.7% of protein
Raw token
HATPase_c:467:2.56e-33:570:107:109- Raw architecture: MEDS:21:1.54e-19:173:160:160#HisKA:362:0.0000000000911:418:58:64#HATPase_c:467:2.56e-33:570:107:109
- Domain description: 1 MEDS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_036211925::NZ_JARMCN010000004.1::G00010
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span121079-124878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_03900RefSeq proteinWP_012959020.1
Context group ID
GCF_036211925::NZ_JARMCN010000004.1::G00010Context members
P4U41_RS03905P4U41_RS03910
Partner locus tags
P4U41_RS03905P4U41_RS03910
Partner old locus tags
P4U41_03900P4U41_03905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012959020.1Primary protein accession used for annex mappings.
UniProt accessionD3FS23Primary UniProt accession resolved in the annex database.
UniProt IDD3FS23_ALKPODisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS03905Primary locus identifier stored in the genes table.
Old locus tagP4U41_03900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000004.1Sequence record reported by the local genomic context database.
Genomic interval121 079-122 845 nt1 767 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span121 079-124 878 ntGCF_036211925::NZ_JARMCN010000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span121 079-124 878 nt3 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
121 079 nt124 878 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
P4U41_RS03905GCF_036211925#P4U41_RS03905
HKClassicCurrent focus
121 079-122 845 nt · Reverse (-)
P4U41_RS03910GCF_036211925#P4U41_RS03910
HKClassic
123 136-124 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000005825#BPOF4_RS21210Use this link to inspect the representative gene detail.
PFAM architectureMEDS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1119918
Simplified PFAM architecture for HKOC_1119918
PFAM domain coverage: 314 / 588 aa (53.4%)
1 aa588 aa
MEDSHisKAHATPase_c
- Simplified architecture: MEDS + HisKA + HATPase_c
- Raw architecture: MEDS[21-173] | HisKA[362-419] | HATPase_c[467-569]
- Domain count: 3
- Matched identifier: HKOC_1119918
- Positioned domains: MEDS 21-173 ; HisKA 362-419 ; HATPase_c 467-569
Cluster members and taxonomy
Representative gene: GCF_000005825#BPOF4_RS21210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key