1 Response_reg#1
4-116 aa · 113 aa · 48.1% of protein
Raw token
Response_reg:4:5e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
P4U41_RS03870
Response regulator, unclassified
Alkalihalophilus marmarensis · GCF_036211925
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_036211925#P4U41_RS03870Stable P2CS identifier used across views.
GenomeGCF_036211925Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 235 aa (62.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HTH_11#2
171-204 aa · 34 aa · 14.5% of protein
Raw token
HTH_11:171:0.00000157:204:34:52- Raw architecture: Response_reg:4:5e-27:116:113:111#HTH_11:171:0.00000157:204:34:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_036211925::NZ_JARMCN010000004.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span113004-113711Genomic interval covered by the local TCS group.
Identifiers
Old locus tagP4U41_03865RefSeq proteinWP_327869179.1
Context group ID
GCF_036211925::NZ_JARMCN010000004.1::G00009Context members
P4U41_RS03870
Partner locus tags
P4U41_RS03870
Partner old locus tags
P4U41_03865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_327869179.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagP4U41_RS03870Primary locus identifier stored in the genes table.
Old locus tagP4U41_03865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JARMCN010000004.1Sequence record reported by the local genomic context database.
Genomic interval113 004-113 711 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 004-113 711 ntGCF_036211925::NZ_JARMCN010000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_036211925::NZ_JARMCN010000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JARMCN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span113 004-113 711 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 004 nt113 711 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
P4U41_RS03870GCF_036211925#P4U41_RS03870
RRunclassifiedCurrent focus
113 004-113 711 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036211925#P4U41_RS03870The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_112 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037820
Simplified PFAM architecture for RROC_1037820
PFAM domain coverage: 147 / 235 aa (62.6%)
1 aa235 aa
Response_regHTH_11
- Simplified architecture: Response_reg + HTH_11
- Raw architecture: Response_reg[4-116] | HTH_11[171-204]
- Domain count: 2
- Matched identifier: RROC_1037820
- Positioned domains: Response_reg 4-116 ; HTH_11 171-204
Cluster members and taxonomy
Representative gene: GCF_036211925#P4U41_RS03870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 521 377 · GCF_036211925
AssemblyASM3621192v1 · Scaffoldhaploid
Genome composition3 989 084 bp · 40,0% GCAlkalihalophilus marmarensis
Signal transduction countsGenes 65 · HK 34 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key