1 dCache_1#1
46-294 aa · 249 aa · 40.8% of protein
Raw token
dCache_1:46:0.0000000266:294:254:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS00680
Histidine kinase, Classic
Eisenbergiella porci · GCF_034172685
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS00680Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage502 / 610 aa (82.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HAMP#2
311-380 aa · 70 aa · 11.5% of protein
Raw token
HAMP:311:0.0000000000744:380:70:693 His_kinase#3
395-474 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:395:6.16e-30:474:80:804 HATPase_c#4
493-595 aa · 103 aa · 16.9% of protein
Raw token
HATPase_c:493:9.92e-16:595:108:109- Raw architecture: dCache_1:46:0.0000000266:294:254:195#HAMP:311:0.0000000000744:380:70:69#His_kinase:395:6.16e-30:474:80:80#HATPase_c:493:9.92e-16:595:108:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000005.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33517-36911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_00680RefSeq proteinWP_321084350.1
Context group ID
GCF_034172685::NZ_JAXFEN010000005.1::G00064Context members
SPF95_RS00680SPF95_RS00685
Partner locus tags
SPF95_RS00680SPF95_RS00685
Partner old locus tags
SPF95_00680SPF95_00685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321084350.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS00680Primary locus identifier stored in the genes table.
Old locus tagSPF95_00680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000005.1Sequence record reported by the local genomic context database.
Genomic interval33 517-35 349 nt1 833 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 517-36 911 ntGCF_034172685::NZ_JAXFEN010000005.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000005.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span33 517-36 911 nt3 395 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 517 nt36 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS00680GCF_034172685#SPF95_RS00680
HKClassicCurrent focus
33 517-35 349 nt · Reverse (-)
SPF95_RS00685GCF_034172685#SPF95_RS00685
RRunclassified
35 346-36 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034172685#SPF95_RS00680The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1007382
Simplified PFAM architecture for HKOC_1007382
PFAM domain coverage: 228 / 610 aa (37.4%)
1 aa610 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[335-379] | His_kinase[395-473] | HATPase_c[493-596]
- Domain count: 3
- Matched identifier: HKOC_1007382
- Positioned domains: HAMP 335-379 ; His_kinase 395-473 ; HATPase_c 493-596
Cluster members and taxonomy
Representative gene: GCF_034172685#SPF95_RS00680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key